PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA14703
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family NF-YC
Protein Properties Length: 275aa    MW: 30723.7 Da    PI: 7.727
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA14703genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC178.37.4e-56911951102
                      NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaa 81 
                                ql++fw++q   ie+++dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaa
  Tp57577_TGAC_v2_mRNA14703  91 QLQMFWSYQrqeIEHVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAA 174
                                89*****998899*********************************************************************** PP

                      NF-YC  82 avtrtdifdflvdivprdelk 102
                                a+trtdifdflvdivprde+k
  Tp57577_TGAC_v2_mRNA14703 175 AITRTDIFDFLVDIVPRDEIK 195
                                ******************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471133.19E-3461185IPR009072Histone-fold
PfamPF008082.1E-20113176IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.109.4E-37114191IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
EISISIKKTN QNKSKRSLIP CPRPYLIQSS KNNFLPLNSQ FHQKINSHQF LLSTSIMENN  60
HNNQQQYPTP QPTAVTSAAP FQHLLQQQQQ QLQMFWSYQR QEIEHVNDFK NHQLPLARIK  120
KIMKADEDVR MISAEAPILF AKACELFILE LTIRSWLHAE ENKRRTLQKN DIAAAITRTD  180
IFDFLVDIVP RDEIKEEGNI VGVGATASGV PYYYPPIGQP AGGMMIGRPA VDPATGVYVQ  240
PPSQAWQSVW QTGADDGSYA GGSGGQHNVD GQSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_C2e-439219119119HapE
4g92_C2e-439219119119HapE
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163169RRTLQKN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0105210.0CT010521.4 M.truncatula DNA sequence from clone MTH2-34D24 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004501705.11e-126PREDICTED: nuclear transcription factor Y subunit C-1-like
RefseqXP_004501704.11e-126PREDICTED: nuclear transcription factor Y subunit C-1-like
SwissprotQ9SMP01e-103NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBLA0A072V2X11e-117A0A072V2X1_MEDTR; Nuclear transcription factor Y protein
STRINGGLYMA06G17780.11e-115(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110713038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48590.11e-103nuclear factor Y, subunit C1